PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018496P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 252aa    MW: 27538.7 Da    PI: 6.8961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018496P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000731441811254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+ YIk L
  MELO3C018496P1 144 RKEKLGERITALQQLVSPF-----GKTDTASVLHEAMGYIKFL 181
                     6678889999999999998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.88132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-5143186No hitNo description
SuperFamilySSF474595.89E-11143196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7143189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAENQSFAGD HLRPTTATTF SQLLFSPHHD DDDDNDVDVD KNHHQIFDYS VSSSSSSFAI  60
DNPPKMLCFG TKEEDQEHPQ LGFKSRQRSA HACSDSSSNS SGNGLKFEFK LKRRNGSNPE  120
TAAIKEASKK TKPEAPCSAG HAKRKEKLGE RITALQQLVS PFGKTDTASV LHEAMGYIKF  180
LHEQVQVLCS PYLQKSQLLS SQSATGKENG ETEGDLKSRG LCLIPVDCSL HLANCTVADF  240
WSPAMAMGKK F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455002.10.0PREDICTED: transcription factor bHLH113
TrEMBLA0A1S3BZZ30.0A0A1S3BZZ3_CUCME; transcription factor bHLH113
STRINGXP_008455002.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103212129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.17e-39bHLH family protein