PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017996P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 343aa    MW: 37681.5 Da    PI: 4.5682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017996P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-102643041055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  MELO3C017996P1 264 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 304
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.428254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14254319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-12259313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.72E-11263308No hitNo description
PfamPF000106.0E-8264304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEAGAISERE WISLSGAYTA EESDFMANLL NNYCIPNELN SDLTLEIPSS YWASSNEPSY  60
YSSDASDSSN IYALSQPNNN LPYTFNESNP LWMPNNGASS LSLDFSVEDV GNADCLDDNG  120
SNIRKTRQCS RLQQSPADSV VNGKSSQQKR RADGVMVEEA MRDDKVGPVS VENASRKRPQ  180
SLLDVEKTKR SGRARKTSKI ASGSCNEEDQ IVSPNGQCTS SFSSEDDCNE AQEINGGITS  240
SSTSNGKPRA SRGSATDPQS LYARKRRERI NERLRILQSL VPNGTKVDIS TMLEEAVQYV  300
KFLQLQIKLL SSDDLWMYAP IAYNGMDIGL NLKLMKQDNA SQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454391.10.0PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1S3BZ990.0A0A1S3BZ99_CUCME; transcription factor bHLH84-like
STRINGXP_008454391.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-42bHLH family protein