PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017572P3

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 359aa MW: 40894.4 Da PI: 6.8012

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017572P3	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.5	5.3e-12	77	118	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k +rr+++NReAAr+sR+RKka+i++Le+ +L + ++L MELO3C017572P3 77 DKIQRRLAQNREAARKSRLRKKAYIKQLETSRIKLIQLEQEL 118 799**************************8666665555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.8E-9	72	120	No hit	No description
SMART	SM00338	2.8E-5	74	132	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.703	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.1E-9	77	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-7	79	117	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	160	235	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MNSSSTKFYN PGRMGLYEPI HHIGMWGETF RTNADLDPPS SFIIETDPKL ENQSDDASLG 60 SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRIK LIQLEQELEK 120 GLLAGSRFDN NQSGLSGTTN SGIFAFESEY EQWVEEQNRQ ICDLRTAVHA DITDIELRIL 180 VENAMRHYFK FFRMKAKAAK ADVSYIMSGM WKTSAERLFL WIGGFRPSEL LKVLIPQLET 240 LTEQQISETG SLRKSCLQAE DALRQGMEKL QQNLFESVVA GQLGEGSYPL QMTAAMERLE 300 ALVSFVNQAD HLRQETLQQM YKILTTRQSA QGLLTLGEFF QRLRALSSLW GNRPCEPA*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MNSSSTKFYN PGRMGLYEPI HHIGMWGETF RTNADLDPPS SFIIETDPKL ENQSDDASLG  60
SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRIK LIQLEQELEK  120
GLLAGSRFDN NQSGLSGTTN SGIFAFESEY EQWVEEQNRQ ICDLRTAVHA DITDIELRIL  180
VENAMRHYFK FFRMKAKAAK ADVSYIMSGM WKTSAERLFL WIGGFRPSEL LKVLIPQLET  240
LTEQQISETG SLRKSCLQAE DALRQGMEKL QQNLFESVVA GQLGEGSYPL QMTAAMERLE  300
ALVSFVNQAD HLRQETLQQM YKILTTRQSA QGLLTLGEFF QRLRALSSLW GNRPCEPA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	1e-152	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	1e-152	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453762.1	0.0	PREDICTED: transcription factor TGA1 isoform X2
Refseq	XP_008453763.1	0.0	PREDICTED: transcription factor TGA1 isoform X2
Swissprot	Q39237	1e-172	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1S3BX17	0.0	A0A1S3BX17_CUCME; transcription factor TGA1 isoform X2
STRING	XP_008453760.1	0.0	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-165	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]