PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017572P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 363aa MW: 41378 Da PI: 7.1332

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017572P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.3e-11	77	118	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k +rr+++NReAAr+sR+RKka+i++Le+ +L + ++L MELO3C017572P2 77 DKIQRRLAQNREAARKSRLRKKAYIKQLETSRIKLIQLEQEL 118 799**************************8665555555445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.6E-8	72	122	No hit	No description
SMART	SM00338	1.4E-5	74	136	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.703	76	120	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.3E-8	77	111	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-6	79	120	No hit	No description
PROSITE pattern	PS00036	0	81	96	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	164	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MNSSSTKFYN PGRMGLYEPI HHIGMWGETF RTNADLDPPS SFIIETDPKL ENQSDDASLG 60 SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRIK LIQLEQELEK 120 ARQQGLLAGS RFDNNQSGLS GTTNSGIFAF ESEYEQWVEE QNRQICDLRT AVHADITDIE 180 LRILVENAMR HYFKFFRMKA KAAKADVSYI MSGMWKTSAE RLFLWIGGFR PSELLKVLIP 240 QLETLTEQQI SETGSLRKSC LQAEDALRQG MEKLQQNLFE SVVAGQLGEG SYPLQMTAAM 300 ERLEALVSFV NQADHLRQET LQQMYKILTT RQSAQGLLTL GEFFQRLRAL SSLWGNRPCE 360 PA*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MNSSSTKFYN PGRMGLYEPI HHIGMWGETF RTNADLDPPS SFIIETDPKL ENQSDDASLG  60
SLGDPHVYDQ DDTKRIDKIQ RRLAQNREAA RKSRLRKKAY IKQLETSRIK LIQLEQELEK  120
ARQQGLLAGS RFDNNQSGLS GTTNSGIFAF ESEYEQWVEE QNRQICDLRT AVHADITDIE  180
LRILVENAMR HYFKFFRMKA KAAKADVSYI MSGMWKTSAE RLFLWIGGFR PSELLKVLIP  240
QLETLTEQQI SETGSLRKSC LQAEDALRQG MEKLQQNLFE SVVAGQLGEG SYPLQMTAAM  300
ERLEALVSFV NQADHLRQET LQQMYKILTT RQSAQGLLTL GEFFQRLRAL SSLWGNRPCE  360
PA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00586	DAP	Transfer from AT5G65210	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681874	1e-152	LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBank	LN713261	1e-152	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453760.1	0.0	PREDICTED: transcription factor TGA1 isoform X1
Refseq	XP_008453761.1	0.0	PREDICTED: transcription factor TGA1 isoform X1
Swissprot	Q39237	1e-177	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A1S3BX50	0.0	A0A1S3BX50_CUCME; transcription factor TGA1 isoform X1
STRING	XP_008453760.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-170	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]