PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017561P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 591aa    MW: 65010 Da    PI: 4.7889
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017561P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.78.6e-1102195903374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     ++Ll+cA+  +s + ++a ++L+r+s+   +dgdp++R+ +yf eAL++rl+   + + + l ++e+ + ns++ l ++k++++++P+ kf+hlt
  MELO3C017561P1 219 KVLLDCARLCDS-EPNRAAKTLNRISKSLREDGDPIERVGFYFGEALRKRLSL--TAMKNCLDSTES-DANSEDFLLSYKALNDACPYSKFAHLT 309
                     78******8877.67788899******************************98..555555555555.5789*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIle +++++++Hi+Df+i qG+QW+aLlqaLa+R+ g+p ++Ri g+ +p+ g   + +l +tg+rL++fA+ l+++fef++ + + +e+l
  MELO3C017561P1 310 ANQAILEVTQRASKIHIVDFGIVQGVQWAALLQALATRATGKPvRVRISGIPAPSLGdsPAASLYATGNRLSEFAKILELNFEFQP-ILTPIENL 403
                     ***************************************77777**********99998999************************.799***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++++v+++E+laVn++lql++llde+ +  +   + L+l kslsP++v++ e ea++n++ F  rf +al++ys++f+sle +lpr+s er  
  MELO3C017561P1 404 KESSFSVQSDEVLAVNFMLQLYNLLDENSTGVH---NALRLAKSLSPQIVTLGEYEASLNRNGFYSRFKNALKFYSSIFESLEPNLPRDSPERLQ 495
                     *************************88888777...9********************************************************** PP

            GRAS 285 vErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     +E+ llgr+i  vv + +++   rr r+e +e+W++ +e+ GF+pv+ls++a +qak ll +++ s  y++ e+  +++ l W+d pL++vS+Wr
  MELO3C017561P1 496 LEKLLLGRRIAGVVGTVEDSrreRRVRMEDKEQWKNLMENTGFEPVALSHYAISQAKILLWNYNySSLYTLIESAPEFLsLAWNDVPLLTVSSWR 590
                     ***********9998766651115567999**********************************9999*****9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.97191568IPR005202Transcription factor GRAS
PfamPF035143.0E-107219590IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQLIN QKQQQDQQQH HLSPLSPFSI LPWTNNINPS STMASSSSSS  60
PNFSFGISSS SFSDPFHVAA PPDSSDPSFH FPNLDHPSAG FRFFPNFSGA GGEFESDEWM  120
DSLVGGGDST DSSTLPSGCE GYGEFGLYGA DPFDGSPPSV VVLENSYKIN SVPPPWPSCP  180
PLVKEERVTN PPAERPLKND VVEGSSSALE VESSSPVLKV LLDCARLCDS EPNRAAKTLN  240
RISKSLREDG DPIERVGFYF GEALRKRLSL TAMKNCLDST ESDANSEDFL LSYKALNDAC  300
PYSKFAHLTA NQAILEVTQR ASKIHIVDFG IVQGVQWAAL LQALATRATG KPVRVRISGI  360
PAPSLGDSPA ASLYATGNRL SEFAKILELN FEFQPILTPI ENLKESSFSV QSDEVLAVNF  420
MLQLYNLLDE NSTGVHNALR LAKSLSPQIV TLGEYEASLN RNGFYSRFKN ALKFYSSIFE  480
SLEPNLPRDS PERLQLEKLL LGRRIAGVVG TVEDSRRERR VRMEDKEQWK NLMENTGFEP  540
VALSHYAISQ AKILLWNYNY SSLYTLIESA PEFLSLAWND VPLLTVSSWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1422145901375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818740.0LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453739.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1S3BWG30.0A0A1S3BWG3_CUCME; scarecrow-like protein 4
STRINGXP_008453739.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein