PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017314P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 269aa    MW: 29885.7 Da    PI: 7.4173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017314P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08161208455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  MELO3C017314P2 161 SHSLAERVRRGKINERLRCLKDIVPGC----YKTMGMAVMLDEIINYVQSLQ 208
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-16155225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-10155212No hitNo description
Gene3DG3DSA:4.10.280.101.8E-15157218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MADHDFTSSF PLEDPNLELM ASHFSPSIPN FTHFLPFSTT NTEIFSQFIP PNFPENNATS  60
SFTTSPVLPS HSVFGPPAPT PSVSTTTHHF HDINNHKRKS MPMDVSESTS GISTPQVSES  120
GFNTKYSSGK GKRLKSLEKE EEKSTREVVH VRARRGQATD SHSLAERVRR GKINERLRCL  180
KDIVPGCYKT MGMAVMLDEI INYVQSLQNQ VEFLSMKLAA ASSFYDFNSE ADAISKLQRA  240
KAHEAKELER LMKEGYGGIA CFHSNLPL*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453408.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK78e-64BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S3BW650.0A0A1S3BW65_CUCME; transcription factor BEE 3-like
STRINGXP_008453408.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.14e-63BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]