PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C017230P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 416aa MW: 45769.5 Da PI: 8.9977 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 83.5 | 5.2e-26 | 71 | 160 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................s 66 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+L + ++sk i+WLl k i+ l+ + + MELO3C017230P1 71 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLqippgfspfhqqmlfpqyvdphhhyyT 160 79*************************************************************444433333333333332222222220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 26.103 | 72 | 130 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.0E-21 | 72 | 219 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MIYENYKDML RNSNSKDQKG SEAKEEGISI RSSSSNNNDG KYSFPKAPTS SSRQWSGFRN 60 PRIVRVSRSF GGKDRHSKVC TIRGLRDRRI RLSVPTAIQL YDLQDKLKLG QPSKVIDWLL 120 DVTKLDIDNL PPLQIPPGFS PFHQQMLFPQ YVDPHHHYYT SSSSSSSSRF CNSQPPPFML 180 DVKSTDAYQT TMTVEKTKLW DMDLAVLPEK AGSATTAATT TKGKWIDGSN NDSNSTQQVE 240 DYNEQISSQK LLSMAICSSN LPNMMNNNNS TPYNNYNSSH DHHHHRQQPS CLSLSQFGNN 300 NNSNGIFPSQ LVEAAQASTS SSSSSSSLFF TPYASYITNP FESHIHFLSS NSHALSNNPF 360 MSSSLHPFAT SQNLKPFPPP SFNLKQLFHA ADTNNNAGGS AGAGSSAKDG AAGNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-16 | 77 | 131 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-16 | 77 | 131 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453284.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
Refseq | XP_008453285.1 | 0.0 | PREDICTED: transcription factor TCP5 | ||||
TrEMBL | A0A1S3BX07 | 0.0 | A0A1S3BX07_CUCME; transcription factor TCP5 | ||||
STRING | XP_008453284.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-45 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |