PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C017185P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 373aa MW: 41641.3 Da PI: 8.461

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C017185P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.4	2.4e-52	20	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +kv ++++ + ++i +vd++k+ePwdLp + +++++ ++fF+ rd+ky+tg r+nrat++gyWkatgkdk++++ MELO3C017185P1 20 LPPGFRFHPTDEELISHYLFEKVMDSSFCC-RAIGDVDLNKSEPWDLP-CENGRKRVVFFFCVRDRKYPTGLRTNRATEAGYWKATGKDKDIYR- 111 79***********************999.89***********.445566788********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgek+dWvmheyrle MELO3C017185P1 112 GKSLVGMKKTLVFYRGRAPKGEKSDWVMHEYRLE 145 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-59	16	169	IPR003441	NAC domain
PROSITE profile	PS51005	55.57	20	169	IPR003441	NAC domain
Pfam	PF02365	1.0E-27	21	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAAAAAAAAV VVNKQDHLEL PPGFRFHPTD EELISHYLFE KVMDSSFCCR AIGDVDLNKS 60 EPWDLPCENG RKRVVFFFCV RDRKYPTGLR TNRATEAGYW KATGKDKDIY RGKSLVGMKK 120 TLVFYRGRAP KGEKSDWVMH EYRLEGKLSA LNLPKTAKNE WVICRVFQKN SSGKKVDISG 180 ISKLGPFGNE FSHSILPPLT DSLPFNGETK RPVVQLANNN NVPCFSIAID SQTKLEPMAS 240 SYNNNTSLFS AIPNPIDSFP RNPHSNSMYS PPNHTFSPLP PPNLQFTNSL LLQDQQSLLR 300 ALIQNVNGGN TLKTEREKIS ISQETCLTTD VNNEISSVFP NLEMGRRPPF DTSQEPPPGP 360 MAPIDLDGFW NY*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAAAAAAAAV VVNKQDHLEL PPGFRFHPTD EELISHYLFE KVMDSSFCCR AIGDVDLNKS  60
EPWDLPCENG RKRVVFFFCV RDRKYPTGLR TNRATEAGYW KATGKDKDIY RGKSLVGMKK  120
TLVFYRGRAP KGEKSDWVMH EYRLEGKLSA LNLPKTAKNE WVICRVFQKN SSGKKVDISG  180
ISKLGPFGNE FSHSILPPLT DSLPFNGETK RPVVQLANNN NVPCFSIAID SQTKLEPMAS  240
SYNNNTSLFS AIPNPIDSFP RNPHSNSMYS PPNHTFSPLP PPNLQFTNSL LLQDQQSLLR  300
ALIQNVNGGN TLKTEREKIS ISQETCLTTD VNNEISSVFP NLEMGRRPPF DTSQEPPPGP  360
MAPIDLDGFW NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-45	17	175	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-45	17	175	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-45	17	175	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-45	17	175	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-45	17	175	17	174	NAC domain-containing protein 19
3swm_B	9e-45	17	175	17	174	NAC domain-containing protein 19
3swm_C	9e-45	17	175	17	174	NAC domain-containing protein 19
3swm_D	9e-45	17	175	17	174	NAC domain-containing protein 19
3swp_A	9e-45	17	175	17	174	NAC domain-containing protein 19
3swp_B	9e-45	17	175	17	174	NAC domain-containing protein 19
3swp_C	9e-45	17	175	17	174	NAC domain-containing protein 19
3swp_D	9e-45	17	175	17	174	NAC domain-containing protein 19
4dul_A	8e-45	17	175	14	171	NAC domain-containing protein 19
4dul_B	8e-45	17	175	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681813	0.0	LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008453218.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-123	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3BVP1	0.0	A0A1S3BVP1_CUCME; LOW QUALITY PROTEIN: NAC domain-containing protein 100-like
STRING	XP_008453218.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-121	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]