PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016966P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 326aa    MW: 36474.9 Da    PI: 6.7876
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016966P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29167226159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ ++++ pr+Y++C+sa +Cpvkkkv+rs edp++++ tYegeH h 
  MELO3C016966P1 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSSApNCPVKKKVQRSLEDPTILVATYEGEHSHA 226
                     58**************************999****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.189162228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.9E-28164226IPR003657WRKY domain
SuperFamilySSF1182902.09E-24165226IPR003657WRKY domain
SMARTSM007747.9E-34167227IPR003657WRKY domain
PfamPF031065.7E-24168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMDIFLDLNV DPNSSYANST MDEAHHSSQK RDQFDGEIYG VQEKLSLSLS NKGSDSSPTL  60
EQELDRKIQE NGKLSQMLRI MYEKYINLQK QVMYLLSNQK QNTEMEGVCS RKRKAEGDQE  120
DYENLEGICS TRDEDFNRWL KRPRLNGNSK VSKVFVQKDA SDPSLVVKDG YQWRKYGQKV  180
TRDNPSPRAY FKCSSAPNCP VKKKVQRSLE DPTILVATYE GEHSHASHFQ TELSLRSING  240
GKGSAVPVLA TIKPSCATVT LDLIHEDGLF KSPKDYASSE SAEAAVWQEF LVQQMASSLK  300
KDPEFAGIVA GAISGKVLGN QTNRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-191662251371WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9521580.0HF952158.1 Cucumis sativus mRNA for WRKY transcription factor (WRKY32 gene), cultivar Summer Green.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452856.10.0PREDICTED: probable WRKY transcription factor 40 isoform X1
TrEMBLA0A1S3BW190.0A0A1S3BW19_CUCME; probable WRKY transcription factor 40 isoform X1
STRINGXP_008452856.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-61WRKY DNA-binding protein 40