PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016901P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 124aa MW: 14456.9 Da PI: 11.3753 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 73.4 | 2.9e-23 | 32 | 79 | 4 | 51 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 +++++dl++y +lpi +AAk++++clTv+K+iCR+ G++RWP+Rk+ks MELO3C016901P1 32 RMTVNDLKEYLHLPISEAAKKMNLCLTVVKKICRRSGLRRWPYRKVKS 79 7899*******************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.097 | 20 | 100 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-20 | 33 | 79 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MVVHRNRVKQ SDSVFPFLFF KSQSEQRQRA GRMTVNDLKE YLHLPISEAA KKMNLCLTVV 60 KKICRRSGLR RWPYRKVKSY QRKMGALGTR LRSRDAETRA RAEAEMERLR QELAQFCAGI 120 VPD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681861 | 1e-125 | LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029. | |||
GenBank | LN713261 | 1e-125 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004141337.2 | 1e-62 | PREDICTED: uncharacterized protein LOC101213670 | ||||
Refseq | XP_022143764.1 | 3e-64 | protein RKD1-like | ||||
TrEMBL | A0A0A0L2U8 | 4e-63 | A0A0A0L2U8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004141337.1 | 3e-60 | (Cucumis sativus) | ||||
STRING | XP_004157374.1 | 3e-60 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 6e-11 | RWP-RK domain-containing protein |