PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016870P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 414aa    MW: 45820.3 Da    PI: 7.5261
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016870P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19237270134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  MELO3C016870P1 237 CSDCNTTTTPLWRSGPQGPKSLCNACGIRQRKAR 270
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-13230270No hitNo description
SMARTSM004013.2E-20231283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.099231267IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-15235270IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-13236273No hitNo description
PfamPF003209.0E-17237270IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MNNPLYPSSS SFVEKQKQEE QEDPNLKLYI FSSSSSSNTS SQLAFSTCFS TNTPTTTTTQ  60
HHHHQTVNLH LHHHLLQQSH HQLLLHHHQD EKFSGGSREE ESEVILSSSS MKEGCESRLL  120
EKQVEEDDDN DHHQIMMKKQ DDHSGSTKYW MSSKMRLMQK MMINTNHNYK TKVIINGTDH  180
GGANNSDHHQ KATRNYNSNN EGNGGKWETM TGKSSSSSIS CNSSNIGSVQ NNGVRVCSDC  240
NTTTTPLWRS GPQGPKSLCN ACGIRQRKAR RAMADLAANS SRGLVAETTE AAASGKKEKH  300
KEKKSRLSCE GDNNNGGNNN VGDHAKINDK YCNKNTDDHI SNNNNLKSKS EIGMMNNEVS  360
FDTTHNFTLR LSKTTSTTTT TSGPSAFGKV FPRDEEEAAI LLMELSCGLL HTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452719.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A1S3BVA60.0A0A1S3BVA6_CUCME; GATA transcription factor 21-like
STRINGXP_008452719.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-22cytokinin-responsive gata factor 1