PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016841P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 403aa    MW: 43538.5 Da    PI: 5.7648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016841P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.23.9e-10241289355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  MELO3C016841P1 241 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 289
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-17236303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-11236293No hitNo description
PROSITE profilePS5088815.485238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16239305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7241289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGDLENDEMG FRNSNDGLMN CPSTMAMGSF FGSGWDPLVS LGQSENYGAA SSMVSSHGEF  60
SNSFPVVLEN HGGSGTTQQG VQYPTDLEMG SKLPCFGSGN FSEMFGSFGV AGQILGGCSS  120
NYRNGGTTNT TQTSQENLPL TGEENLPLSV GSPNGKIRKR GLDSTFPFNS NKKSDMKLKK  180
DVSGDSSSTQ EEKNAEMEQN LGGNSRGKST GKQTKEKSNN SAEAPKENYI HVRARRGQAT  240
NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA  300
TVNPDVNVDI ERILSKDIFN VRGSNGNVLG FDPGLSAVSP VPPHRMFQFQ GTMSNMPTTS  360
TQFPPLPQTM LESDLQSLLQ MGFDSGSTID NLGPNGRLKP ER*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818610.0LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452681.10.0PREDICTED: transcription factor bHLH74-like
TrEMBLA0A1S3BV770.0A0A1S3BV77_CUCME; transcription factor bHLH74-like
STRINGXP_008452681.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.11e-83bHLH family protein