PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016469P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 280aa MW: 32614.6 Da PI: 4.7293 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.8 | 3.4e-07 | 229 | 248 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC+++H MELO3C016469P2 229 CPFHLKTGACRFGQRCSRIH 248 *******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.042 | 223 | 251 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 4.3E-13 | 229 | 248 | IPR009145 | U2 auxiliary factor small subunit |
Pfam | PF00642 | 3.5E-5 | 229 | 248 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 4.3E-13 | 248 | 268 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEEPKLGGGG GGGEEEEEEE EVKPCSVDNL CRKEKRKALK KIKRKQLRKE LALKRLQEEE 60 ARLNDPEEQR RVQLMELEEE ERSERERKLF EERERAWMEA MELKKKKMAE EEEEEQQRRA 120 LEEESTPRQA ENENEFNEED GWEYIEGPAE IIWKGEEIIL KKKLIKVPKK GVEPEKSLED 180 AHRPTSNPLP PQSEAFTDYK NTPISTRQVI EDVASQVPNF GTEQDKSHCP FHLKTGACRF 240 GQRCSRIHFY PDKSCTLLIK NMYNGPGLAW EQDEGLEVC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681858 | 0.0 | LN681858.1 Cucumis melo genomic scaffold, anchoredscaffold00028. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452219.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 5 | ||||
Swissprot | Q9SY74 | 1e-85 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A1S3BUH0 | 0.0 | A0A1S3BUH0_CUCME; zinc finger CCCH domain-containing protein 5 | ||||
STRING | XP_008452219.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 4e-50 | C3H family protein |
Publications ? help Back to Top | |||
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