PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C016391P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 255aa MW: 26728.2 Da PI: 9.1185 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.4e-20 | 134 | 168 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ MELO3C016391P1 134 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 168 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.89 | 128 | 164 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.5E-19 | 128 | 180 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-14 | 131 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.9E-17 | 132 | 168 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.23E-13 | 133 | 165 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 134 | 159 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 5.8E-18 | 134 | 168 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMHHYGGGGG GGGGGASSFS LFLSVPNHGA ADMYSSSTNY ASSSSSSSSS PSSVDCTLSL 60 GTPSTRSSEF DSDKRAAARN PHRRSAGSYV SNFCWDLLHP KHKTSGRGAG GAASNNNITA 120 AVSNSGDPLL ARRCANCDTT STPLWRNGPR GPKSLCNACG IRFKKEERRA AAATVNSSTA 180 ESNHHHHSMF NGSYTNSSTW VPQQLPATTQ KHPCLSAAIG NDDVGPENGI SFLSWRLNVA 240 NTDHRPTLVH DFTR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681873 | 0.0 | LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027. | |||
GenBank | LN713261 | 0.0 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008452087.1 | 0.0 | PREDICTED: GATA transcription factor 18-like | ||||
TrEMBL | A0A1S3BSF9 | 0.0 | A0A1S3BSF9_CUCME; GATA transcription factor 18-like | ||||
STRING | XP_008452087.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4105 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 1e-38 | GATA family protein |