PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016338P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 272aa    MW: 30446.9 Da    PI: 6.942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016338P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30140198259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D + WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers +dp+v+++tY+ eHnh 
  MELO3C016338P1 140 SDSWGWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSLSDPEVFVVTYTAEHNHA 198
                     79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-31125200IPR003657WRKY domain
PROSITE profilePS5081132.271134200IPR003657WRKY domain
SuperFamilySSF1182905.49E-26137200IPR003657WRKY domain
SMARTSM007742.9E-35139199IPR003657WRKY domain
PfamPF031066.7E-26141197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEDWGLQAIV KGCNGIPIGS STTAATTRLM EDTNNLYSFL RSDQEEDGGF FSSCVYNNYY  60
NPQISSSSIF HDEFEGLFGR NSSNNSAAAS ISHLLRDFKE PADQKLHHKN QIIQPTKQKQ  120
SKKSRQNRVV KEVKADKVCS DSWGWRKYGQ KPIKGSPYPR SYYRCSSSKG CSARKQVERS  180
LSDPEVFVVT YTAEHNHAEP TRRNALAGTT RKKFPALENP NLDMILSPNN STSVASIEED  240
QHHPMEGVAD GEVLMDMPFE FFTGLEDLLF G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-181412001977Probable WRKY transcription factor 4
2lex_A1e-181412001977Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840250.0GU984025.1 Cucumis sativus WRKY protein (WRKY26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452006.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A1S3BTM40.0A0A1S3BTM4_CUCME; probable WRKY transcription factor 29
STRINGXP_008452006.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.15e-33WRKY family protein