PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C016281P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 328aa    MW: 36572.2 Da    PI: 4.834
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C016281P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29103163259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+v+eitY+g+H+++
  MELO3C016281P1 103 EDGYSWRKYGQKDILGATYPRSYYRCTFRntqNCWAVKQVQRSDEDPSVFEITYRGKHTCS 163
                     8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-2894164IPR003657WRKY domain
SuperFamilySSF1182902.09E-25101164IPR003657WRKY domain
SMARTSM007747.2E-40102164IPR003657WRKY domain
PfamPF031063.7E-26103162IPR003657WRKY domain
PROSITE profilePS5081122.033103160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MESGWSWDQK SLIGELIQGM ELTKQLRTEL SSASGEESRG SLVQGILSSY EKALLILKWN  60
GPTNQLQMVE ATPGLPGSPI STQPRWTEQV KVNSETGFEG PHEDGYSWRK YGQKDILGAT  120
YPRSYYRCTF RNTQNCWAVK QVQRSDEDPS VFEITYRGKH TCSQGNYLAQ TCHSPDKQEQ  180
KETDPDPHEL QPLQENLFGN QTIQNIEKLE NKASTFCFGS SSTSVGCKDI VNAGFSNLAI  240
DTHSALGSFT RSFTSPTSPD KNYFTPSPCQ RSNVGGTHSV QNLDPDVHEI FSANTSATNS  300
PILDWDFPFD SEQINPNFPF NSQGFFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-17103162968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818730.0LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451934.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3BSQ20.0A0A1S3BSQ2_CUCME; probable WRKY transcription factor 41
STRINGXP_008451934.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-57WRKY family protein