PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015921P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 576aa    MW: 66154.2 Da    PI: 4.6661
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015921P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.81.5e-812145732374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      ++L+++Ae v  +++ +a++lL+r + +asp+g+++qRl+ yf +AL++r++r  ++  + ++ ++++e+n +     +k      P+ ++ hl
  MELO3C015921P1 214 ANVLFAAAEKVGYQQFDRASRLLQRCEWTASPYGNAVQRLVYYFSKALRKRIQR--ETGREVIEEQQKEEMNLDVLRGCMK-----LPFQQVMHL 301
                     579***************************************************..3333444555555444444444443.....5******** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     ta qaIle v+  +++H iD++i  G++W a++q+L   ++ +   l+iT+v+    ++  ++ ++g+ L+++Ae+l++pf+f++++++++ +++
  MELO3C015921P1 302 TAVQAILEHVKLINKIHLIDLEIRSGVHWSAFMQSLVdLKELPIKLLKITAVVT---NKYYSIDQVGKWLENVAESLNIPFSFKAILVSDMMEIK 393
                     *************************************445567779********...468899******************************** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                      e ++++ +E+la+ + l l ++ +++ sle+    ++k++++l+P ++vv+e ea++n +sF++rf+eal + ++ fd+l+  + ++++ r+k+
  MELO3C015921P1 394 EELFETEDDEMLAIYCPLVLRNMISRPSSLEN----LMKVIRNLNPSIMVVSEIEANYNLSSFVNRFIEALFFTASYFDCLKICIEEDEDSRRKM 484
                     ************************99999999....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+   g+ i+n+va eg++r++r  + e Wr+ + ++ ++++++s+   +qakl+ ++++ ++  ++e+++++lv gWk+ p++svSaW+
  MELO3C015921P1 485 EAL-CGKGIENIVASEGSDRVARSVKIEVWRAFFARFRMEEMEFSDLCLSQAKLVSKEFPyGKFCSLEKNEKCLVVGWKETPIISVSAWQ 573
                     *98.9*******************************************************88889************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.918187552IPR005202Transcription factor GRAS
PfamPF035145.0E-79214573IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MADGFFSFTP FDFSGSQPET FFPSNGGVHE KQETEQHGKE DDCPFRMDEF GDFNFPSANQ  60
FGFYQQDISK IVDQTNYQHP NSDCLIFDEL LFGNDFTISE LIQEKSKISE NLSADSISFN  120
SNKQVSNPCL DSLQLLNSYG TKVKRMKGEN LNKRGDEAGE ENKTLSTEEI FRVAGARYVH  180
FFPEGHDDFY MLTHPCDFAL SGLSEDERED VELANVLFAA AEKVGYQQFD RASRLLQRCE  240
WTASPYGNAV QRLVYYFSKA LRKRIQRETG REVIEEQQKE EMNLDVLRGC MKLPFQQVMH  300
LTAVQAILEH VKLINKIHLI DLEIRSGVHW SAFMQSLVDL KELPIKLLKI TAVVTNKYYS  360
IDQVGKWLEN VAESLNIPFS FKAILVSDMM EIKEELFETE DDEMLAIYCP LVLRNMISRP  420
SSLENLMKVI RNLNPSIMVV SEIEANYNLS SFVNRFIEAL FFTASYFDCL KICIEEDEDS  480
RRKMEALCGK GIENIVASEG SDRVARSVKI EVWRAFFARF RMEEMEFSDL CLSQAKLVSK  540
EFPYGKFCSL EKNEKCLVVG WKETPIISVS AWQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3324257332375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451477.20.0PREDICTED: DELLA protein RGL2-like isoform X1
TrEMBLA0A1S3BQZ00.0A0A1S3BQZ0_CUCME; DELLA protein RGL2-like isoform X1
STRINGXP_004136152.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-53RGA-like 2