PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015910P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 241aa MW: 27431.7 Da PI: 6.7141 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105 | 3.9e-33 | 141 | 198 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts C+vkk+ver+ +dp++v++tYeg+H+h+ MELO3C015910P1 141 EDGYRWRKYGQKAVKNSPHPRSYYRCTSVACQVKKRVERCFQDPSIVVTTYEGQHTHP 198 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-35 | 126 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-29 | 132 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.341 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-39 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-26 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEEVVAADSL RYPFLDGNES KSCLGFMELL EVDRDFSSQF DVFETSSPSL SSSLISNPEN 60 LEIWNQWPTT PNYSSSISST SSEIVNGELT EPNLEGGEEK QDRQPTVKTD KQLKTKKRSP 120 KKKGVEPRFA FMTKSEVDHL EDGYRWRKYG QKAVKNSPHP RSYYRCTSVA CQVKKRVERC 180 FQDPSIVVTT YEGQHTHPSP IMARPTFFPP PISVTLYDDY LIQNSHNSNV MSHSIAWCHH 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-27 | 130 | 200 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-27 | 130 | 200 | 7 | 77 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984037 | 0.0 | GU984037.1 Cucumis sativus WRKY protein (WRKY52) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451465.2 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 2e-46 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1S3BQY1 | 1e-180 | A0A1S3BQY1_CUCME; probable WRKY transcription factor 23 | ||||
STRING | XP_008451465.1 | 1e-180 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 3e-47 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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