PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015400P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 308aa    MW: 34819.3 Da    PI: 4.9801
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015400P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731192.6e-37107205197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                     klfqrlw++eDei lLqG++d+++++g+ + ++ d+  fy+++k++++++++k+qlveK+rrLKkK+++   k++sgk+++f+++hdq +fe+s+
  MELO3C015400P1 107 KLFQRLWTDEDEIELLQGFLDYTMQRGTtHHHQnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISR 201
                     579*************************633446************************************************************* PP

          DUF573  94 kiWg 97 
                     kiW 
  MELO3C015400P1 202 KIWS 205
                     ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.6E-35109205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDPRNDAVFP DEDLEDDEES LDDDDDDEEE EELNDEPSPS TSSAGALPVP SVSATVTIAT  60
PPAVSVVPPP SIVSISSADL IRQRLETATA EPLTLQGEKK PLDESRKLFQ RLWTDEDEIE  120
LLQGFLDYTM QRGTTHHHQN DTALFYDQIK SKLQLDFNKN QLVEKLRRLK KKYRNVIGKI  180
SSGKDFNFKS PHDQATFEIS RKIWSNTGRI GVDDNALDDD EPAPTPYASY MDHRNEEMMA  240
NCAEKKPTPT PKSRKRSRPG SGIRMEAPRS SHENLNKEKN SIYHHHHNNN NANNKTSQQQ  300
RKNVTIT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450771.11e-177PREDICTED: mediator-associated protein 1
RefseqXP_016900999.11e-177PREDICTED: mediator-associated protein 1
SwissprotQ9CAV73e-57STKLJ_ARATH; Probable transcription factor At3g04930
TrEMBLA0A1S4DYE01e-175A0A1S4DYE0_CUCME; mediator-associated protein 1
STRINGXP_008450771.11e-176(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.25e-58DNA-binding storekeeper protein-related transcriptional regulator