PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015315P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 346aa    MW: 37684.8 Da    PI: 9.393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015315P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F r  nL+ H r H
  MELO3C015315P3 77 FMCEICNKGFQRDQNLQLHRRGH 99
                    89*******************88 PP
2zf-C2H216.42.6e-05154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+Lk H + +
  MELO3C015315P3 154 WKCEKCSKKYAVQSDLKAHTKAC 176
                     58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-87699No hitNo description
PfamPF121714.0E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997799IPR007087Zinc finger, C2H2
SMARTSM003550.0317799IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035597119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5142174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-8149174No hitNo description
PROSITE profilePS501578.6154182IPR007087Zinc finger, C2H2
SMARTSM0035558154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSKISGCSDD GGSFVSEAEK LENQFINGSF ESHHQQQQQQ QPQLVVPKKK RNLPGTPVPD  60
AEVVALSPET LMATNRFMCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS GSETKRKVYV  120
CPEASCVHHD PGRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDLK AHTKACGSKE  180
YKCDCGTIFS RRDSFITHRA FCDALAEEHN KLLIAHQGST TTMAAAASST AINNGPSFQP  240
QPLSHLLSRP SILPLPLTTL PHDLMPIPPK PLNLSAGSMF SSSISNNSTT TTTTFQNDNH  300
LFPSSSALMS ATALLQKAAQ MGAAVSSGGN SSAPCFNSSM IHEKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32150212365Zinc finger protein JACKDAW
5b3h_F2e-32150212365Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450641.10.0PREDICTED: protein indeterminate-domain 12-like
SwissprotQ8H1F51e-105IDD7_ARATH; Protein indeterminate-domain 7
SwissprotQ9SCQ61e-105IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A1S3BPM30.0A0A1S3BPM3_CUCME; protein indeterminate-domain 12-like
STRINGXP_008450641.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.17e-91C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]