PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015207P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 432aa    MW: 47883 Da    PI: 8.2379
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015207P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12365410655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + +++L +AveYIk Lq
  MELO3C015207P1 365 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKGLQ 410
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.557359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16362425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-12363414No hitNo description
Gene3DG3DSA:4.10.280.103.5E-15364423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-13365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9365410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEADFQQQHH HILHEHHQQQ PQMNSGLTRY RSAPSSYFRS LTDREFCDQF FNRPSSPETE  60
RIFARFMTGG GGPEGSSQNL DESQKSAQGG EVLVSTEANQ QTSYVGNQTR AIHQQPSNVN  120
TNYPPVSSTP SFYQTSMKPP LPNQGMISQT DGSGSIAVDL KPRIRTDGGR TSNLIRQSSS  180
PAGLFDHIKI NDSGYAALRG MGNFGTRSSF NEEASFSSPS RLKNFSPRTL PPHSSGLMSP  240
VVGIEKKSIR ETNQDTKSFA ESQTSDYGST SFPVGSWEDS AVMSDNIVGQ KPLEDNDDDE  300
KSYSNFNISD TKKMDTGNRP PLLAHHLSLP NTSAEMSAIE KILQFSDSVP CKLRAKRGCA  360
THPRSIAERV RRTKISERMR KLQELVPNMD KQTNTSDMLD LAVEYIKGLQ KQVQTLSDNR  420
AKCKCSHSQH Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450443.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_008450444.10.0PREDICTED: transcription factor bHLH122 isoform X1
RefseqXP_016900867.10.0PREDICTED: transcription factor bHLH122 isoform X1
TrEMBLA0A1S4DY090.0A0A1S4DY09_CUCME; transcription factor bHLH122 isoform X1
STRINGXP_008450443.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-72bHLH family protein