PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014645P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 184aa MW: 20503.8 Da PI: 9.7823 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56 | 5.5e-18 | 135 | 170 | 1 | 34 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ nC+t Tp+WR+gp g+k+LCnaCG++yrk+ MELO3C014645P1 135 CTnyNCNTNFTPMWRKGPLGPKSLCNACGIRYRKET 170 55559*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.7E-12 | 127 | 172 | No hit | No description |
SMART | SM00401 | 2.0E-11 | 129 | 181 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.0E-13 | 133 | 174 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.1E-15 | 135 | 169 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.253 | 139 | 183 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 2.09E-11 | 139 | 168 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MDDLVVNEMN QMTANNQGLA RNNEMMSEPN YNPHQIVWSK DLKTYVLKSN NYGQLHPSSY 60 STTTHQAKPI ATSTPNNSTP NLPLPKKGHN NDLYTLLNPA SRISDDHEAE ASSGGRRKGS 120 RRRRASATND VERRCTNYNC NTNFTPMWRK GPLGPKSLCN ACGIRYRKET MNKEAMAAEN 180 SNG* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 0.0 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011654362.1 | 1e-101 | PREDICTED: GATA transcription factor 29 | ||||
TrEMBL | A0A0A0L0J0 | 1e-100 | A0A0A0L0J0_CUCSA; Uncharacterized protein | ||||
STRING | XP_004162027.1 | 1e-98 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 9e-17 | GATA transcription factor 29 |