PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014530P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NF-YC | ||||||||
Protein Properties | Length: 280aa MW: 31130.5 Da PI: 4.712 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.2 | 8.6e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +P l+ska elf+ +l r++ + + rt++ ++++++ ++fdfl d+v + MELO3C014530P1 6 DTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQNLCDRTYEITLKRGARTMNSLHLKQCIQTFNVFDFLRDVVGK 86 5789*************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.2E-26 | 2 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.56E-19 | 3 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.6E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPLLVSKALE LFLQNLCDRT YEITLKRGAR 60 TMNSLHLKQC IQTFNVFDFL RDVVGKVPDL GGSDAAEDRH ISKRRKVADE DVGNDSDEES 120 KRSKTEAGHC ISGRGRGRGR GRGRGRSSRH LEKDTAIHYN NFEDDLEIPN HPDDDLHKTE 180 PDNGVAEARV ENDNTLVDKA LEPSVRNFDL NVNLDEDGDS TSVPVVASTG SPVKPPTDSK 240 HDEYPGWSVA EMEKMAIDPI QLANMNETID DEEDYDEDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 144 | RGRGRGRGRG |
2 | 135 | 145 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681842 | 0.0 | LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449611.1 | 0.0 | PREDICTED: dr1-associated corepressor-like isoform X2 | ||||
TrEMBL | A0A1S3BME7 | 0.0 | A0A1S3BME7_CUCME; dr1-associated corepressor-like isoform X2 | ||||
STRING | XP_008449610.1 | 0.0 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 8e-62 | nuclear factor Y, subunit C11 |