PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014519P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 694aa    MW: 75982.3 Da    PI: 7.4734
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014519P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.4e-094064431954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  MELO3C014519P1 406 FEHflHPYPKDSDKIILAKQTGLTRSQVSNWFINARVR 443
                     554459******************************88 PP
2BELL111.74.2e-36261332172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +rq+lq+kkakL+ +l+eV+++Y+qy++q++ v+s Fe++aglgsak+Y+slAl +iS++FrcLkdai++qi
  MELO3C014519P1 261 QRQDLQMKKAKLIGMLDEVEQKYRQYHQQMRGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICGQI 332
                     699********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-60182330IPR006563POX domain
PfamPF075267.4E-46187328IPR006563POX domain
PROSITE profilePS5007111.888384447IPR001356Homeobox domain
CDDcd000866.43E-12387448No hitNo description
SMARTSM003892.2E-9387451IPR001356Homeobox domain
SuperFamilySSF466899.84E-17388453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28390453IPR009057Homeodomain-like
PfamPF059201.4E-17404443IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MATYFHGGSE IQTNSDGIHT LYLMNPNYVP YSDTHSQSSH NMLFLNPSST HALNPSTLPH  60
APPSNNHFVG IPLPTTDSSR PSFHEISTLH PHRLHYNLWA PVDQQQQQQQ SLHADSADLT  120
FRRPTAQQGL SLSLSSQQSL YRTLSAEQEI QGGGGGGAPS GEEIRVSGNS GTSVSVVSSS  180
ITGVQSVILG SKYLKAAQEL LDEVVHVGKA NYKTDKFGDG TKDNKMKMKK ESTATIGGGS  240
SAATGGGETT SKSVAELSTA QRQDLQMKKA KLIGMLDEVE QKYRQYHQQM RGVVSCFEQA  300
AGLGSAKSYA SLALETISKQ FRCLKDAICG QIKATGKSLG EDQENWLGSS KMEGSSTTSS  360
SRLRYVDHHL RQQRALQQLG MIQHNTWRPQ RGLPERAVSV LRAWLFEHFL HPYPKDSDKI  420
ILAKQTGLTR SQVSNWFINA RVRLWKPMVE EMYLEEIKEQ EQNGNSQDMI RGGGSDHHHH  480
QNNNNNHTHN DPQYSKTENL MNNNPSHSSI SSSSILGIGS TTASGGFNLV PPSSDNNILL  540
STPKKPRTNT ITTAVTTTNN NAVVPENPSS ESMLLRDIDI VNSNTYPVGE IGSTFNSELL  600
TPRFHANGVS LTLALPHNNS DHLSLSPNQT NYHHLSSNQN LHLGRSSRLD ITNHHPGPPD  660
FSDVNPAAPP AYDHVDMQTT KRFAAQLLPD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-16393451563Homeobox protein Meis2
3k2a_B9e-16393451563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449597.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A1S3BLS10.0A0A1S3BLS1_CUCME; BEL1-like homeodomain protein 1
STRINGXP_008449596.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.38e-90BEL1-like homeodomain 1