PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014295P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CPP

Protein Properties

Length: 583aa MW: 63551.6 Da PI: 6.4914

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014295P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	52	1.4e-16	287	324	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkks+Clk+YCeCfaag++C e C+C+dC+Nk MELO3C014295P1 287 CKRCNCKKSRCLKLYCECFAAGVYCIEPCSCQDCFNKP 324 89**********************************96 PP
2	TCR	51.6	1.8e-16	371	409	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN MELO3C014295P1 371 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 409 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.1E-19	285	326	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.017	286	411	IPR005172	CRC domain
Pfam	PF03638	7.4E-12	288	323	IPR005172	CRC domain
SMART	SM01114	7.5E-18	371	412	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.3E-12	373	409	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MQDSPVFNFI NSLSPIKPVK SIHITQTFNS ISFPSLPVFT SPPQHHFSPL KSPKRPNFSN 60 PSRSPPPVSK NEGGAVIIMD QLLEIFVPEI PTASTPVIPP QETVDSDAGE VVVFRCPIST 120 EAREQEDEAL FQNDCVLDTI EENKLLSNLQ SGNMRRRCLD FEMAGNPNSA TVEARAGDAS 180 IPVSSSSSSS SLRRTLPGIG LHLNSLAATL KNSDSDNLCS DSQPSLPSSS ASIFASNSTR 240 DQLLLASSTP DSENPPQESA NLTGEELNQI NPKKNWKLME NAGIGACKRC NCKKSRCLKL 300 YCECFAAGVY CIEPCSCQDC FNKPIHEAMV LETRRQIESR NPLAFAPKVI MNSDSVSELG 360 DDSNKTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDESALIG 420 TEIEQEEEGR EHCQKTIDIQ SDEDQQNPSN AAPSTPLGPN RSLIPFPFQL KRRLPSFLND 480 ESSSRLSVRF KLEKHGITQT EPKFEKTPCE DVTPETLCNG CPSITDVKSV SPNSKRVTLP 540 PPQADFRPLP STRIGRKLIL QSIPSFPSLT NQNSGINGPS EL*

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MQDSPVFNFI NSLSPIKPVK SIHITQTFNS ISFPSLPVFT SPPQHHFSPL KSPKRPNFSN  60
PSRSPPPVSK NEGGAVIIMD QLLEIFVPEI PTASTPVIPP QETVDSDAGE VVVFRCPIST  120
EAREQEDEAL FQNDCVLDTI EENKLLSNLQ SGNMRRRCLD FEMAGNPNSA TVEARAGDAS  180
IPVSSSSSSS SLRRTLPGIG LHLNSLAATL KNSDSDNLCS DSQPSLPSSS ASIFASNSTR  240
DQLLLASSTP DSENPPQESA NLTGEELNQI NPKKNWKLME NAGIGACKRC NCKKSRCLKL  300
YCECFAAGVY CIEPCSCQDC FNKPIHEAMV LETRRQIESR NPLAFAPKVI MNSDSVSELG  360
DDSNKTPASA RHKRGCNCKK SGCLKKYCEC YQGGVGCSIN CRCEGCKNAF GRKDESALIG  420
TEIEQEEEGR EHCQKTIDIQ SDEDQQNPSN AAPSTPLGPN RSLIPFPFQL KRRLPSFLND  480
ESSSRLSVRF KLEKHGITQT EPKFEKTPCE DVTPETLCNG CPSITDVKSV SPNSKRVTLP  540
PPQADFRPLP STRIGRKLIL QSIPSFPSLT NQNSGINGPS EL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-17	290	408	14	120	Protein lin-54 homolog
5fd3_B	2e-17	290	408	14	120	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449927.1	0.0	PREDICTED: CRC domain-containing protein TSO1, partial
Swissprot	Q9LUI3	1e-121	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	A0A1S3BP37	0.0	A0A1S3BP37_CUCME; CRC domain-containing protein TSO1
STRING	XP_008449927.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24563	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-116	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]