PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014134P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 534aa MW: 58533.8 Da PI: 6.4629 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.4e-31 | 210 | 267 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++++i+Y+g+H+h+k MELO3C014134P1 210 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIIYKGTHDHPK 267 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.4 | 3.1e-33 | 385 | 443 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ MELO3C014134P1 385 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 443 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.376 | 204 | 268 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.7E-27 | 205 | 268 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.06E-25 | 206 | 268 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-33 | 209 | 267 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-24 | 210 | 266 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-37 | 370 | 445 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-29 | 377 | 445 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.549 | 380 | 445 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-39 | 385 | 444 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-26 | 386 | 443 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MDPTDSDLPD PSNASSGAKY KLLSPAKLPI SRSPCITIPP GLSPTSFLDS PVLLTNLKVE 60 PSPTTGSFTK LPMAHDSSSS AIYPMTSMAF SNTNASDEGR SNYFEFKPYV GPNMVPADLS 120 HRKGEQSSEV QGQPQPFTAP PMTKFEISVM SNDLSRSTQM DTHTVTSGAS VPEADGDDIN 180 HSLNTNSRVQ APQSDPKGSG IPVVSDRLSD DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC 240 EVKKLFERSH DGQITDIIYK GTHDHPKPQP SRRYSASASM NVQEDGTDKP SSLSGQDDRS 300 CSMYAQSMHT IEPNGTTDPS LPANDSITEG AGTTLSCKNH DEVDDDDIYL KRRKMELGGF 360 DVCPMVKPIR EPRVVVQTLS EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNVGCPVRK 420 HVERASHDPK AVITTYEGKH NHDVPTAKTS SHDVTGPSTI PSSRYRLEES DTISLDLGVG 480 IGTGGENRPN EYRQALHSQL VENRAPNGNF NFEVVQENSA PTYFGVLNRG VIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 199 | 445 | 6 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 199 | 445 | 6 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984017 | 0.0 | GU984017.1 Cucumis sativus WRKY protein (WRKY17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008449073.1 | 0.0 | PREDICTED: probable WRKY transcription factor 20 | ||||
Swissprot | Q93WV0 | 1e-174 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A1S3BKL7 | 0.0 | A0A1S3BKL7_CUCME; probable WRKY transcription factor 20 | ||||
STRING | XP_008449073.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-176 | WRKY family protein |