PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C014066P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 769aa MW: 83453.5 Da PI: 6.6683 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.7 | 4.4e-32 | 350 | 407 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k MELO3C014066P1 350 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 407 7****************************************.***************85 PP | |||||||
2 | WRKY | 103.1 | 1.6e-32 | 564 | 622 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ MELO3C014066P1 564 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 622 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.181 | 344 | 408 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.6E-28 | 348 | 408 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-25 | 348 | 408 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-36 | 349 | 407 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-24 | 350 | 406 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.7E-37 | 549 | 624 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 556 | 624 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.124 | 559 | 624 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-38 | 564 | 623 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-25 | 565 | 622 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MILFYILFPL GFVVRARNRV VMGRTDDNVA IIGDWVPPSP SPRTFFSAMQ MLGEDIGSSK 60 PSMDTTTSSD HKTEELFLRP REQTVSENAI ARGGIPGVNS GDRGMEFGTF SEQKFRGGLV 120 ERIAARAGFN APRLNTESIR STDHSLNSEV KSPYLTIPPG LSPTTLLDSP VFLSNSLAQQ 180 SPTTGKFPFL PNVSSTRSST MMPEANNKGN NNPFHDNNTS FAFRPSVESG SSFFLNAASK 240 TASATVLPQS CPRIELPVPR SENSFQSHLA EPSLSLPQNR IGHHPQVGLS TTYVEKDDGS 300 KAVSEEQRPF DSLGGGSGEH SSPLDEQLDE GEQRGSGDSM AGGACGAPSE DGYNWRKYGQ 360 KQVKGSEYPR SYYKCTHPNC QVKKKVERSH EGHITEIIYK GAHNHPKPSP TRRGAIGSSD 420 SHMNMQLDIP AQAGQQSADV PLWEDSQKGV PSGAPDWMHE NLEVTSSASL GPEYGNQPNT 480 LQAQNGSHIE TVEAIDASST FSNDEDEDDR GTHGSITLGY EGEGDESESK KRKLDAYVTE 540 MSGATRAIRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCTVRKH 600 VERASHDLKS VITTYEGKHN HDVPAARNSS HISSGTSSPV TGQNSTAAIQ THAHRPGPPQ 660 PQNTIPRFER PAFGFAGRQQ MGTAHGFAFG MNQPGLGNLT MAAVGQPKLP VLPMHPYLGQ 720 AHHVNEMGFL LPKGEPNVEP TSDLGLNFSN GSTVYQQIMS RLPLGPEM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-37 | 350 | 625 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-37 | 350 | 625 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984016 | 0.0 | GU984016.1 Cucumis sativus WRKY protein (WRKY16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008448990.1 | 0.0 | PREDICTED: probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1S3BLY1 | 0.0 | A0A1S3BLY1_CUCME; probable WRKY transcription factor 2 | ||||
STRING | XP_008448990.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9524 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 0.0 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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