PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013820P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 406aa    MW: 43362.8 Da    PI: 6.6461
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013820P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.68.9e-21298360163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elkr+rrkq+NRe+ArrsR+RK+ae++eL+ ++++L++eN +L++e+++++ e++ l se+
  MELO3C013820P1 298 ERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENASLRSEVNRIRSEYELLLSEN 360
                     89*******************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.4E-29497IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.4E-48136263No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-17292356No hitNo description
PfamPF001702.1E-19298360IPR004827Basic-leucine zipper domain
SMARTSM003383.0E-22298362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.139300363IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-11301357No hitNo description
CDDcd147022.19E-23303353No hitNo description
PROSITE patternPS000360305320IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MSGSEMEKPP KDKETKTPPP PTTQEQTTTT SAGTVNPDWS GFQAYSPIPP HGFLASSPQA  60
HPYMWGVQHI MPPYGTPPHP YVAMYPPGGI YAHPSMPPGS YPFSPFAMPS PNGVTEASGN  120
TAGSLEGDVK PPEVKEKLPI KRSKGSLGSL NMITGKNNEM GKTSGTSANG AYSKSAESAS  180
EGTSEGSDAN SQNESQPKLG SRQDSLEVEV SQNGNSMHGT QNGGSNTQAM AVIPLATAGA  240
PGVVPGPTTN LNIGMDYWGA SSTIPAMRGK VQSTPVAGGL VTTGSRDSIQ SQLWLQDERE  300
LKRQRRKQSN RESARRSRLR KQAECDELAH RAEALQEENA SLRSEVNRIR SEYELLLSEN  360
ASLKERLGEV SGNEELRTSR NGQRTSNETT TQPTESEVVQ IGNKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1314320RRSRLRK
2314321RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818601e-148LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132601e-148LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448633.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_008448634.10.0PREDICTED: bZIP transcription factor 16
RefseqXP_008448635.10.0PREDICTED: bZIP transcription factor 16
SwissprotQ501B21e-168BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1S3BK610.0A0A1S3BK61_CUCME; bZIP transcription factor 16
STRINGXP_008448633.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-157basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]