PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013772P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 443aa    MW: 48984.9 Da    PI: 7.9881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013772P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-13268313454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  A +YI++L
  MELO3C013772P1 268 NHVEAERQRRQKLNQRFYALRSVVPNV-----SKMDKASLLADAADYIREL 313
                     799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-3219184IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.365264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-19266332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-15267318No hitNo description
Gene3DG3DSA:4.10.280.105.2E-19268331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-11268313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-17270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDEIIISPSS SSPNSITTLQ QKLRLILHNR HEWWAYSIFW LPSEDIDGNL VFKWGGGHLR  60
DAQDGDNGGG GGSQLNSFVF EEVSMDPVEA GNFAGLEWYY TVSINQSYGA VDNVVGRVFG  120
SSTYIWLTAD NGLYFYDCER VKDARLRGVQ TLVFVSTSNG VLELGSSELI KQDWSLVQCA  180
KSLFGFTLFK QKDHVGVGGG GMIQPQAPSC SGVIKRETGN GGGGSSSDSL SDNSDGNFMS  240
TVNNNNVGKK RGKRSANNKT ELSSLPVNHV EAERQRRQKL NQRFYALRSV VPNVSKMDKA  300
SLLADAADYI RELKSKVQKL ESKLKQPQHQ TSSSMSNAFD QINRSTISTV EQTTMSYTNN  360
NNNNNVEVRL IGSEAMVRVQ CRDENYPSAR LLNVLKDLGL QVHHASLSSV NEMMLQDVVV  420
RVPQVVAWRE KTLRTAILQR LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-24266330670Transcription factor MYC2
5gnj_B4e-24266330670Transcription factor MYC2
5gnj_E4e-24266330670Transcription factor MYC2
5gnj_F4e-24266330670Transcription factor MYC2
5gnj_G4e-24266330670Transcription factor MYC2
5gnj_I4e-24266330670Transcription factor MYC2
5gnj_M4e-24266330670Transcription factor MYC2
5gnj_N4e-24266330670Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448555.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1S3BKK50.0A0A1S3BKK5_CUCME; transcription factor MYC3-like
STRINGXP_008448555.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-48bHLH family protein