PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MELO3C013357P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 29587.1 Da PI: 6.3419 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.4 | 3.7e-09 | 88 | 135 | 4 | 51 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N+ L k+l+ MELO3C013357P1 88 KKSKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQHLMKRLQG 135 577899999**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-13 | 83 | 153 | No hit | No description |
SMART | SM00338 | 1.6E-10 | 85 | 152 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 4.7E-14 | 86 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.059 | 87 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.63E-7 | 89 | 135 | No hit | No description |
CDD | cd14686 | 2.14E-12 | 91 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
MDDGELDFSN QDVFSSPNIE IPSSCSMDSF FDELLKDTHT CTHTHTCNPP GPDYSHTHTC 60 FHVHTKIVPA PSEEDKVVTD DTAESTEKKS KKRPLGNREA VRKYREKKKA RAASLEDEVV 120 RLRALNQHLM KRLQGQAALE AEIARLKCLL VDIRGRIEGE IGSFPYQKAV NPNLSNPSMP 180 GAYVMNPCNM QCEDQVYCLH PGVDGSRSSE GAVINGQSFG ACEFENLQCL ANHDSGSKEL 240 PGCGVGNAVS TDISSGATKK KGGSRKETWT * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681798 | 0.0 | LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019. | |||
GenBank | LN713255 | 0.0 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447959.1 | 0.0 | PREDICTED: basic leucine zipper 23-like isoform X2 | ||||
Swissprot | Q8GTS2 | 1e-111 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A1S3BJJ3 | 0.0 | A0A1S3BJJ3_CUCME; basic leucine zipper 23-like isoform X2 | ||||
STRING | XP_008447959.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2567 | 32 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16770.1 | 4e-90 | bZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|