PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012992P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | GATA | ||||||||
Protein Properties | Length: 324aa MW: 35296.1 Da PI: 5.9542 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.2 | 4.1e-17 | 220 | 254 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l MELO3C012992P1 220 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 254 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.0E-72 | 14 | 304 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 12.44 | 214 | 250 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-15 | 214 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.3E-14 | 215 | 252 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.05E-14 | 216 | 278 | No hit | No description |
CDD | cd00202 | 2.61E-12 | 219 | 266 | No hit | No description |
Pfam | PF00320 | 7.8E-15 | 220 | 254 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MELPEYLVGG YYGTGASQFS PHNKKSTSEH FPVDEYLLDF SNEDVAMHGG FFDNVAGNCS 60 DNSSTLTAID SCNSSVSGGD NQLLGKFESG SFCEAQFSSE LCIPCDDLAE LEWLSNFVEE 120 SFSTEEIDKD FPAIPFISGG ISSAATPETS SSSGATAFGY GNAKTTTFFH SEALTLPGKA 180 RSKRSRATPC DWSTRLLQAT APEKTEGAMG KPETTSGRKC LHCAAEKTPQ WRTGPMGPKT 240 LCNACGVRYK SGRLVPEYRP ASSPTFVSTK HSNSHRKVME LRRQKEMQHQ EQFVSQSSIF 300 SRSNGCDEYL IHRHNGGDFS HMM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681827 | 0.0 | LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008447537.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Swissprot | O82632 | 2e-71 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | A0A1S3BI99 | 0.0 | A0A1S3BI99_CUCME; GATA transcription factor | ||||
STRING | XP_008447537.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 3e-70 | GATA transcription factor 9 |
Publications ? help Back to Top | |||
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