PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012932P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 310aa    MW: 33870.6 Da    PI: 5.9866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012932P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.77.1e-161531912159
                     -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +sYYrCtsa C+vkk+vers  dp+vv++tYeg+H+h+
  MELO3C012932P1 153 RKSYYRCTSAACNVKKRVERSFADPTVVVTTYEGQHTHP 191
                     57************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-17131193IPR003657WRKY domain
SuperFamilySSF1182902.09E-17138193IPR003657WRKY domain
PROSITE profilePS5081119.439141193IPR003657WRKY domain
SMARTSM007749.3E-20146192IPR003657WRKY domain
PfamPF031066.6E-10153191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEDYNNNNIN DQQQIIKMED TSTITDGGGG GDGGGGVFSF SDNIIPNGLF DFCDGDKCSV  60
GFMELLGLNY NSEFTEAFNN PPATPNCSSS VSSASSDAPN DDEPPQQQQQ HNPTKQLKGI  120
LKKKKEKEKE KKARFAFMTK SEVDHLEDGY RWRKSYYRCT SAACNVKKRV ERSFADPTVV  180
VTTYEGQHTH PSPILTRSAL AVAIPTPPFT PGPGGECVGG VVAMPWLKPT NNDAHDGDIL  240
PAMSHQYFQN STYFTAQNLA ANHNRNNHIG AANAAGILQE KRFCNPNSSF LVDHGLLQDV  300
VPPHMLKQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-151391931077Probable WRKY transcription factor 4
2lex_A2e-151391931077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840400.0GU984040.1 Cucumis sativus WRKY protein (WRKY55) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900417.11e-171PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 68
TrEMBLA0A1S4DWQ91e-170A0A1S4DWQ9_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 68
STRINGXP_004147997.11e-166(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-31WRKY DNA-binding protein 23