PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012426P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 354aa    MW: 38260.9 Da    PI: 5.9801
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012426P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-17260293134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  MELO3C012426P1 260 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 293
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.9E-751350IPR016679Transcription factor, GATA, plant
SMARTSM004011.6E-16254304IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53254290IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-15258317No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14258291IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.13E-14259308No hitNo description
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
PfamPF003202.5E-15260293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIGNNFVDEI DCGSFFDQID DLLDFPVEDV DTGLPPAKGG DSTNSFPTIW PTHSESLPGS  60
DSVFSANSNS DLSAELSVPY EDIVQLDWLA NFVEDSFCGG SLTMNKEEPK DLTHNQFQTS  120
SPVSVLESSS SCSSDKTLQP RSPEPTVATP GQQRGRARSK RPRPATFNPR PPIQLISPAS  180
SVTETTTPDQ TLQLVPKAPS DTENFAESRP SVKLPKHGAA ASGTQKIKNK KIKLSFSLAP  240
PLEAGAGNQN LPSSQSVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP  300
AASPTFIPSL HSNSHKKVLE MRNKTDENTA AITISVQPEL IPNPNSAISM DYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446884.10.0PREDICTED: GATA transcription factor 8
TrEMBLA0A1S3BGY00.0A0A1S3BGY0_CUCME; GATA transcription factor
STRINGXP_008446884.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-42GATA transcription factor 9