PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012390P2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | NAC | ||||||||
Protein Properties | Length: 562aa MW: 62259.9 Da PI: 4.4013 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.1 | 2.9e-52 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yLk+kv+gk++++ + i+ +diyk+ePwdLp k k+k+++ ewyfFs dkky +++r+nrat++gyWk+tgkd++v MELO3C012390P2 9 LAPGFRFHPTDEELVSYYLKRKVSGKPFRF-DPISVIDIYKSEPWDLPgKsKLKSRDLEWYFFSALDKKYGNSSRTNRATEKGYWKTTGKDRPVR 102 579**************************9.99***************6347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++vg+kktLv++ grap+g +t+Wvmhey+l MELO3C012390P2 103 H-SARTVGMKKTLVYHIGRAPRGARTNWVMHEYKL 136 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.94E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.37 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009819 | Biological Process | drought recovery | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence Send to blast |
MGRDSATSLA PGFRFHPTDE ELVSYYLKRK VSGKPFRFDP ISVIDIYKSE PWDLPGKSKL 60 KSRDLEWYFF SALDKKYGNS SRTNRATEKG YWKTTGKDRP VRHSARTVGM KKTLVYHIGR 120 APRGARTNWV MHEYKLTDEE MGKIATVQDA FVLCRIFQKS GTGPKNGEQY GAPFIEEEWE 180 ENEELAVVPG DDQAANELLG VGGVCIEGDD FSENVEEGIL SESAPPPPFN FYYGETSNSI 240 EQSDNYIEDD QKPAVGICET SELPDGQKFF VLPDECGLHD RLVKHEYLAE SSNDAGANAA 300 DEVDAGDVDG RYVLNEPFYS TSDNLSFSDE LLLEPNELSN PTESDPADFD VLEEYLTFFD 360 ADGDNADMSF DPSEILGSGS PIPDQTEVVG GATEHASTSK QTADLHHDNE ASSSSMQRPE 420 DPKSEPDIKY PFLKHTSHML GSIPAPFASQ FTSKDAAIHL NSAPQASSSV RVTAGMLIIR 480 NIALNGYEVN NMYGKNSDLN VIYLYGIVEG NIDSSQLLPN AGVNSSKSEP LISRYFLYFF 540 ILFWVLILSA SFKVARCIHS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-47 | 5 | 165 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-47 | 5 | 165 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-47 | 5 | 165 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-47 | 5 | 165 | 13 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-47 | 5 | 165 | 16 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-47 | 5 | 165 | 13 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-47 | 5 | 165 | 13 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (Ref.6, PubMed:24323506, PubMed:25219309). Promotes reactive oxygen species (ROS) production during drought-induced leaf senescence. In response to abscisic acid (ABA)-mediated drought stress signals, binds directly to the promoters of RBOHC and RBOHE genes, encoding ROS biosynthetic enzymes, resulting in ROS accumulation and triggering leaf senescence via programmed cell death (PCD). ROS-induced leaf senescence sustains plant survival under drought conditions (PubMed:22313226). Involved in heat stress response. Modulates PCD through a ROS-mediated positive feedback control under heat stress conditions. This may provide an adaptation strategy for plant survival under extreme heat stress conditions (PubMed:25219309). Acts as repressor in preventing anther dehiscence during stamen development by suppressing genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1, AOS, AOC3, OPR3 and 4CLL5/OPCL1 (PubMed:24323506). {ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:24323506, ECO:0000269|PubMed:25219309, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00343 | DAP | Transfer from AT3G10500 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) (PubMed:22313226, PubMed:25219309). Induced by heat shock (PubMed:25219309). Induced by cold, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:22313226, ECO:0000269|PubMed:25219309}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446811.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like | ||||
Swissprot | Q949N0 | 1e-157 | NAC53_ARATH; NAC domain-containing protein 53 | ||||
TrEMBL | A0A1S3BGS5 | 0.0 | A0A1S3BGS5_CUCME; NAC domain-containing protein 53-like | ||||
STRING | XP_008446811.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5347 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-151 | NAC domain containing protein 53 |
Publications ? help Back to Top | |||
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