PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012212P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | TCP | ||||||||
Protein Properties | Length: 310aa MW: 35376.9 Da PI: 10.3521 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 128.9 | 5e-40 | 72 | 193 | 3 | 130 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssgkaaksa 94 +kkdrhski+T++g+RdRR+Rls+e+a+ fFdLqd+LGfdk+skt+eWL++++ aike + + +s+s+c +s++ ++ +k+ MELO3C012212P1 72 KKKDRHSKICTSKGPRDRRMRLSLEIARNFFDLQDMLGFDKASKTVEWLFTKSRSAIKEVKEKylsEVKSKSSC-------YSSTDLVTNLCKEV 159 79*************************************************************77655555666.......33333344677888 PP TCP 95 akskksqksaasalnlakesrakarararertrekm 130 +s k++++ + ++kesr kar rarertr k MELO3C012212P1 160 LPSGKKRRRRF--RIVDKESRYKARVRARERTRAKS 193 88888888888..9*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-34 | 72 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.41 | 73 | 131 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.318 | 175 | 192 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MIIKSSFWAT FCILKNTNYL QTILIKLELL KVAITQTMKQ QQQQQPIIPP NTKPKPIIVH 60 QNPRKRSSSE MKKKDRHSKI CTSKGPRDRR MRLSLEIARN FFDLQDMLGF DKASKTVEWL 120 FTKSRSAIKE VKEKYLSEVK SKSSCYSSTD LVTNLCKEVL PSGKKRRRRF RIVDKESRYK 180 ARVRARERTR AKSIRRGLEV SKSDLEGNPN GVRKLGDVSE ENSSNKSKIS THVSLCENEK 240 DLGSEEKNSD SLIMDKRVSK EICSEDIHLL PDSSMDMPSL SLDTMKASSA GLKLLELDEV 300 DGVLIFYGE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | KKRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446552.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A1S3BFB2 | 0.0 | A0A1S3BFB2_CUCME; transcription factor TCP12-like | ||||
STRING | XP_008446552.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 5e-31 | TCP domain protein 12 |