PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012181P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 201aa    MW: 23070.8 Da    PI: 6.7403
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012181P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-1583140562
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                     +++rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L+++l++ +++ +k+  e
  MELO3C012181P1  83 RKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRTENHKLIDKLNHVSDNHEKVLLE 140
                     79***********************************************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-1479143IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.73781144IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.8E-1283156No hitNo description
SuperFamilySSF579597.03E-1383133No hitNo description
PfamPF001702.0E-1383141IPR004827Basic-leucine zipper domain
CDDcd147021.28E-1984134No hitNo description
PROSITE patternPS00036086101IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MLPGEISGIQ FFPSENSFQI PSNIDMMQNS FQTLHHFNGF LGNLPMSHVP HPSHEFLKQS  60
SSFSYNSTSD DAEEQQKSII DERKQRRMIS NRESARRSRM RKQKHLDELW SQVLRLRTEN  120
HKLIDKLNHV SDNHEKVLLE NARLKEEASD LRQMLSDLQI GSPYTPCLSN LEDIPCNTAH  180
MRAESSSCQS IANSIDNLLH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195102RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900227.11e-146PREDICTED: basic leucine zipper 43
SwissprotQ9FMC22e-38BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S4DW641e-145A0A1S4DW64_CUCME; basic leucine zipper 43
STRINGXP_008446497.11e-146(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.17e-44basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]