PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012144P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 448aa    MW: 50519.1 Da    PI: 9.0975
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012144P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042385407123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k F++   L  H r+H
  MELO3C012144P1 385 HKCPICFKAFKSGQALGGHKRSH 407
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-7536No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5735IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139120.0053931IPR007087Zinc finger, C2H2
PROSITE profilePS5015712.3936IPR007087Zinc finger, C2H2
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.72397124IPR007087Zinc finger, C2H2
SMARTSM003554.297119IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.05E-698119No hitNo description
PfamPF139120.08499119IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-6380407No hitNo description
PfamPF139121.7E-9385407IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494385407IPR007087Zinc finger, C2H2
SMARTSM003550.088385407IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MENSKENKFV CNFCHKSFTC GKSLGGHIRI HKNEKSPRVA GRERSSMLKF QVPKERRRSK  60
RDSESEVGNG NSGYGLRENP KITQRFADSG FSSRQEKFCR ECGQGFQSSE ALSWHLACHT  120
ENERENRRFE YNYGITHHRS DIPERVREAA ICLMMMSKAP RFSGFEDNDS AAESSDSKSS  180
SRYFRESETS ASNSNGGGLE MKEVTGRINK LEVYECGGGE NSDSENFRKE VCKRVKLKVS  240
VHRALMDEEY EKPDFKFGVR VGRASGDILK DSMKTKKNDD QVHASSYKYE LRKRLKNGSY  300
SPDLWEGSSK KIPSEIFRSH DRETYTRMSN GCEWTHQSGE NSVNTTTNSI SIPSRELIES  360
SNGKNKGNQD TSGNEEKKLG PKRKHKCPIC FKAFKSGQAL GGHKRSHVVG SLEDASIVTR  420
QESNGMAGLF DLNVPAPMEE EENGRWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446424.10.0PREDICTED: uncharacterized protein LOC103489174
TrEMBLA0A1S3BFQ30.0A0A1S3BFQ3_CUCME; uncharacterized protein LOC103489174
STRINGXP_008446424.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-22C2H2-like zinc finger protein