PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012081P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 96aa    MW: 10504.8 Da    PI: 10.2163
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012081P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0922631555
                    HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    +i + +++L++l+P+ + + +s ++s + +L+++++YI+sLq
  MELO3C012081P1 22 QIADLISKLQQLIPEiRNGRSSSRVSASKVLQETCNYIRSLQ 63
                    799************998999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.245762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00421768IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-102182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-62263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-92278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSGRSSRSRR SGVGSRNISD EQIADLISKL QQLIPEIRNG RSSSRVSASK VLQETCNYIR  60
SLQREVDDLS DRLSQLLAST DPESAQAAII RSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818963e-80LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132643e-80LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446331.13e-59PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX13e-34PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S3BFH56e-58A0A1S3BFH5_CUCME; transcription factor PRE6-like
STRINGXP_008446331.11e-58(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-35bHLH family protein