PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011372P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ARF
Protein Properties Length: 520aa    MW: 57024.8 Da    PI: 6.6482
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011372P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.9e-23107208199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvlt+sd+++ g +++p+ +a+++         + +  +tl ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   ++s
  MELO3C011372P1 107 FAKVLTSSDANNGGGFSVPRYCADSIfpplnyqV-E-PPVQTLAITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDAVIFA--RNS 197
                     89****************************9743.3.33359************************************************..568 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ ++v+++r+
  MELO3C011372P1 198 NGDMFVGIRRS 208
                     9999*****97 PP
2Auxin_resp88.81e-29232315183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a++ ++FevvY+Pr++tseFv+++ekv+++l+ ++ +G R+km +eteds ++++ +Gtv++ s      W++S+Wr+L+
  MELO3C011372P1 232 AAELAAEFKPFEVVYYPRTGTSEFVIPAEKVNNSLNYQWYPGIRVKMPVETEDSLKTQWyQGTVTSASVPAHGPWKGSPWRMLE 315
                     67889999***************************************************9**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-29102211IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-34104214IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-20107208IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07107209IPR003340B3 DNA binding domain
SMARTSM010195.3E-20107209IPR003340B3 DNA binding domain
CDDcd100177.50E-20107207No hitNo description
PfamPF065071.0E-26232314IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MMDPNLWRAF SGNSAHIHTV GSEVYYFVQG HLEQATYVPT LSRSVLSNPT TKCIVSAADY  60
TADPLTDEVC LKFNLNPIPP GQSVSQVVHP FSGGDDGNGQ RNRIEKFAKV LTSSDANNGG  120
GFSVPRYCAD SIFPPLNYQV EPPVQTLAIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV  180
NHKKLIAGDA VIFARNSNGD MFVGIRRSSK SIGGGDCSKW NSQVPAETVA HAAELAAEFK  240
PFEVVYYPRT GTSEFVIPAE KVNNSLNYQW YPGIRVKMPV ETEDSLKTQW YQGTVTSASV  300
PAHGPWKGSP WRMLEVTWEE TDALQSAKFV SPWEVELASP SPPIPPPLHS AKKYRGPQKS  360
GMVNSEADLF SPMMRFGDST MGQFNQSLLS FNSFPAGMQG ARQNFFRESG SFNAYNEISP  420
PTSDENSMFK LNTVPKTQTV STDLHIGSVQ SDTLSPDSQA SVLSFATGTA ENQSCNSTKA  480
GVNSFQLFGQ IIYMSPPVEK EIDNGADSDD GDKKRKQCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-63133650388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445361.20.0PREDICTED: auxin response factor 17
TrEMBLA0A1S3BD990.0A0A1S3BD99_CUCME; Auxin response factor
STRINGXP_008445361.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-102auxin response factor 17