PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C011295P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35054.4 Da PI: 9.1944 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.4 | 7e-29 | 149 | 209 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 ++Dgy+WrKYGqK+ k+++ pr+YY+C++a +Cpvk+kv+rs edp +++ tYeg+Hnh+k MELO3C011295P1 149 VKDGYQWRKYGQKVTKDNPSPRAYYKCSFApTCPVKRKVQRSVEDPCYLVATYEGQHNHPK 209 58***************************99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.29 | 144 | 210 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.4E-28 | 145 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 146 | 210 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-32 | 149 | 209 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-23 | 150 | 208 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MEPTTTTINT SLDLNLNPPP YTDDQSHPPT PNSPLKQQAP TTGILAEKLN RISSENKKLN 60 QMLGVVVENY SVLKNQVIDL LMKSRKRKAA PGCDNCCNFN RSASDQYCGC CSDDNDSCYN 120 NKRPRENNSK PKVMRVLVPT PVSDSTLIVK DGYQWRKYGQ KVTKDNPSPR AYYKCSFAPT 180 CPVKRKVQRS VEDPCYLVAT YEGQHNHPKP NSGIEYQLVG PINLGSNTKL DSSNNVSSSP 240 SSSIKSPSSS SSLIPSISLD YLTKSQPQIP SPSSSNSSSS TQKLLVQQMA TLLTRDPNFT 300 RALATAITGN MVDNEIWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 148 | 210 | 16 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 148 | 210 | 16 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984014 | 0.0 | GU984014.1 Cucumis sativus WRKY protein (WRKY12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008445262.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1S3BC94 | 0.0 | A0A1S3BC94_CUCME; probable WRKY transcription factor 40 | ||||
STRING | XP_008445262.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31408 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-62 | WRKY DNA-binding protein 40 |