PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011130P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 366aa    MW: 39968.3 Da    PI: 5.4035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011130P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.5e-18255289135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  MELO3C011130P1 255 CMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.104.0E-15249286IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.2E-17249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.637249285IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-15251313No hitNo description
CDDcd002028.35E-15254301No hitNo description
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
PfamPF003207.6E-16255289IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEAPEYFQIN AYSSQFSSPD HADASTTAAA APEHFIVEEL LDFSNNEDDA VFTDAGGGGG  60
GGGLFYNNNN TTSNDHNNNN NSAESSAITV MESCNSSSSF FEDISGSNLG DAHFSSELCV  120
PYDDLAELEW LSNFVEESFS SEDMQKLELL SGVKVKSDEI PAQSPQPTAT RTAAAIFKPE  180
IVSVPAKARS KRSRALPSNW NNSSLLPLSP TAEPEITAPI GQPYSIKKPL PKVAATAKKK  240
DNPDVGFSSG EGRKCMHCAT DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FVLTKHSNSH RKVLELRRQK EILRAQQQQQ QHLLLDHRQD MIFDASNGDD YLIHQHVGPD  360
FRQMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445001.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-87GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1S3BBN70.0A0A1S3BBN7_CUCME; GATA transcription factor
STRINGXP_008445001.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.16e-83GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]