PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011083P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 287aa    MW: 31600.9 Da    PI: 4.6396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011083P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07199225127
                      TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktI 27 
                      r++W++ Ed+ l  avk+ G g+W+ I
   MELO3C011083P1 199 RKPWSEAEDLELMAAVKKCGEGNWANI 225
                      789*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.586194238IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.8E-11195240IPR009057Homeodomain-like
SuperFamilySSF466893.37E-9196241IPR009057Homeodomain-like
PfamPF002491.7E-5199225IPR001005SANT/Myb domain
CDDcd116609.96E-11200241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MKLKKQSVTE KDFSTLLRRY SPTTVLALLQ EVAQVPEAKI DWNELVKNTS TGISNPREYQ  60
MLWRHLAYRH ALLDDLEDEK APLEDDSDLE CDLEPFPSVS CETLTEAAAC AKVFISSGSP  120
SDLNVPNSST IEAPLTISLP RSYTDGVQFE NVDPACSIKG EIITVPVSVQ RQPVLAPPSA  180
EGLNTNGPTY GNNASRRKRK PWSEAEDLEL MAAVKKCGEG NWANIIRGDF LSDRTASQLS  240
QAIIITFYAD KYLVCYLLAQ ASIYSILGKC SSPILFLLFS SFNVQL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444919.11e-177PREDICTED: uncharacterized protein LOC103488120
TrEMBLA0A1S3BCC81e-176A0A1S3BCC8_CUCME; uncharacterized protein LOC103488120
STRINGXP_008444919.11e-177(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-63MYB_related family protein