PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011078P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 378aa    MW: 41497.5 Da    PI: 4.7999
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011078P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.65.3e-16229265135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  MELO3C011078P2 229 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 265
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94265100IPR010399Tify domain
SMARTSM009794.2E-765100IPR010399Tify domain
PfamPF062003.8E-106899IPR010399Tify domain
PfamPF062031.1E-14158199IPR010402CCT domain
PROSITE profilePS5101712.65158200IPR010402CCT domain
PROSITE profilePS501148.524223271IPR000679Zinc finger, GATA-type
SMARTSM004014.9E-8223276IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-11224273No hitNo description
Gene3DG3DSA:3.30.50.101.5E-14227270IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.27E-16228272No hitNo description
PROSITE patternPS003440229256IPR000679Zinc finger, GATA-type
PfamPF003207.5E-14229265IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAAANPQPLQ ARPFQEHVQV PSMMGDDDGE YEDGGGGGGG GDVMDDVEEA HMTSVSVANH  60
GGLVMASRTS ELTLSFEGEV YVFPAVTPEK VQAVLLLLGG RDVPAGVPTM EVPYDHNNRV  120
MQIMEILLHI MWVCSYVRSC IHLQGMVDTP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY  180
TVRKEVAQRM HRKNGQFASL KESSGASSWE SAHSCLQDGT RSETVLRKCQ HCGVSENNTP  240
AMRRGPAGPR TLCNACGLMW ANKGTLRDLS KGGRNVSLDH MEPETPMDVK PVIMEGEFSG  300
IQDEHGTPED PSKTMTEGSS NPSIDLDEED INETTGDLTN SLPMRIVNHS SNDDEQEPLV  360
ELANPSDTDI DIPTNFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-166LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-166LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444908.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_008444909.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8GXL72e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A1S3BAZ60.0A0A1S3BAZ6_CUCME; GATA transcription factor 24-like isoform X1
STRINGXP_008444908.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-63ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]