PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010330P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | YABBY | ||||||||
Protein Properties | Length: 142aa MW: 16021.1 Da PI: 9.2023 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 132.9 | 3.9e-41 | 43 | 115 | 99 | 170 |
YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +k++ +p + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl MELO3C010330P1 43 NKMEIRVPTTIPAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 115 344555555566555559*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.8E-40 | 32 | 115 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-8 | 50 | 108 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 63 | 109 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MAAAFHSLSW QDVQVPSYNL YGCNGADFQG DFGSSSKCNN NINKMEIRVP TTIPAEERVV 60 NRPPEKRQRV PSAYNQFIKE EIQRIKASNP EISHREAFST AAKNWAHFPR IHFGLMLETN 120 NQVKLDDGSE RLMSRAALLN K* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 7e-76 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 7e-76 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899792.1 | 1e-103 | PREDICTED: axial regulator YABBY 5-like | ||||
Swissprot | Q8GW46 | 2e-45 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A1S4DUX7 | 1e-101 | A0A1S4DUX7_CUCME; axial regulator YABBY 5-like | ||||
STRING | XP_008444049.1 | 1e-102 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-47 | YABBY family protein |
Publications ? help Back to Top | |||
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