PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C010064P3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C3H | ||||||||
Protein Properties | Length: 182aa MW: 19868.4 Da PI: 5.6268 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.5 | 9.2e-13 | 43 | 69 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ MELO3C010064P3 43 PGQPECQFYMKTGDCKFGAVCRFHHPR 69 5789*********************96 PP | |||||||
2 | zf-CCCH | 41.8 | 1.8e-13 | 89 | 115 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ MELO3C010064P3 89 PGEPLCIFYSRYGICKFGPSCKFDHPM 115 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 7.8E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.596 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-9 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 46 | 71 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-5 | 48 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-11 | 90 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 93 | 113 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MFALYSYLYY ILNSSFGCMD QLGSVSSSES PQQTRENVFP ERPGQPECQF YMKTGDCKFG 60 AVCRFHHPRE RVLPAPDCVL SPIGLPLRPG EPLCIFYSRY GICKFGPSCK FDHPMGIFTY 120 NLSAASSANA PVQHLFGTSS GTTALNLSSE GLVEAGSAKP RRLSISETRE MPSDDENDAE 180 G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681808 | 1e-155 | LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012. | |||
GenBank | LN713256 | 1e-155 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016899804.1 | 1e-114 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
Refseq | XP_016899805.1 | 1e-114 | PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 3e-81 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A1S4DUZ3 | 1e-112 | A0A1S4DUZ3_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X1 | ||||
TrEMBL | A0A1S4DVR1 | 1e-112 | A0A1S4DVR1_CUCME; zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
TrEMBL | E5GBK3 | 1e-112 | E5GBK3_CUCME; Nucleic acid binding protein | ||||
STRING | XP_004142565.1 | 1e-113 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 4e-59 | zinc finger protein 1 |