PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009855P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 284aa    MW: 32449.1 Da    PI: 7.1401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009855P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.14.8e-5531321128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL +kv +++++   +i+evd++k+ePwdLp ++k +ekewyf++ rd+ky+tg r+nrat++gyWkatgkdke+l+ 
  MELO3C009855P1   3 LPPGFRFHPTDEELITHYLSPKVLSSTFSS-PAIAEVDLNKCEPWDLPGRAKMGEKEWYFYCVRDRKYPTGLRTNRATAAGYWKATGKDKEILKG 96 
                     79*************************999.78***************99999****************************************97 PP

             NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++ vg+kktLvfykgrap+g+k++Wvmheyrl
  MELO3C009855P1  97 rnnDNNIVGMKKTLVFYKGRAPRGHKSNWVMHEYRL 132
                     6656666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-622173IPR003441NAC domain
PROSITE profilePS5100559.3333173IPR003441NAC domain
PfamPF023655.4E-294132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MELPPGFRFH PTDEELITHY LSPKVLSSTF SSPAIAEVDL NKCEPWDLPG RAKMGEKEWY  60
FYCVRDRKYP TGLRTNRATA AGYWKATGKD KEILKGRNND NNIVGMKKTL VFYKGRAPRG  120
HKSNWVMHEY RLHSNNHSSS SSSSPPPYSQ HHLLPTSSSS QTKEWVICRI FQKSESSMAK  180
KGNDEIMMAE SSSSSCVHLL PPLTEESDAA NLHVTCFSNS TEMEEYDYHQ NDDAFFWLPD  240
FQEIKQTQFF STTTTTNNNN NKPASNYDQY QLHPSPPPSL WNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-53117718172NAC domain-containing protein 19
3swm_B1e-53117718172NAC domain-containing protein 19
3swm_C1e-53117718172NAC domain-containing protein 19
3swm_D1e-53117718172NAC domain-containing protein 19
3swp_A1e-53117718172NAC domain-containing protein 19
3swp_B1e-53117718172NAC domain-containing protein 19
3swp_C1e-53117718172NAC domain-containing protein 19
3swp_D1e-53117718172NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443393.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ25e-84NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1S3B7F70.0A0A1S3B7F7_CUCME; NAC domain-containing protein 100-like
STRINGXP_008443393.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-81NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]