PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C009350P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | MYB_related | ||||||||
Protein Properties | Length: 772aa MW: 85822.4 Da PI: 6.7338 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.1e-08 | 52 | 94 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + MELO3C009350P1 52 AWTREEEESFFTALRQVGKN-FEKITCHVQ-SKNKDQVRHYYYRL 94 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-11 | 43 | 99 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-5 | 47 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.623 | 48 | 99 | IPR017884 | SANT domain |
SMART | SM00717 | 2.3E-5 | 49 | 97 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-5 | 52 | 95 | No hit | No description |
Pfam | PF00249 | 9.4E-6 | 52 | 94 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 772 aa Download sequence Send to blast |
MQTDLIVSSN SETHLHSETI IAHVGDQGIA ASTPDHVIEP LPAKKPTRQW AAWTREEEES 60 FFTALRQVGK NFEKITCHVQ SKNKDQVRHY YYRLVRRMNK LLAPGLCLDA KNSKDTNAAM 120 LRWWSLLEKY SCKASKLHLK PRRFKIFVEA LEHQLLKDRK KNVRKRPLQG ENCPPPIPNA 180 VSNQSRALGH DGRAVKLVLV DTQNIPKLGP RKTTSRRNVN VGINRGNNGG YPTVLKPSRQ 240 RRKSEGGVSS AAYKKWEKAA IAGVSLVADA AEHLERTITN KDVLRDQNTL GKKSTDPAGS 300 PLLLLPPLQP NSLIDVASIK LKLQLFPVDD GTRRALESDK HNPYLELTLS TRKKISSVLE 360 HLSRKWGNSS AAHGELMLFP YSIQRKSLTD CQRWTQDSFE SAGDVYATIG RPQVFRLRYG 420 WCSNAEHESV ELQTSVPAYC IQDDHIMDAR DIEGRIVHAA SIDAQPVDFN KDEVGTFTKN 480 MSTPTAPCES ERCISARPND LLRSSDPVLN MSWDKKNAAD RTIIQRSDDV DELKLSNGTS 540 LSAGEWADSL TNISIGDLLS GVSQDVDANC VDTPLAEGTQ CLQQIPFSCD SFDAAIAAHI 600 SRQQDKTVTQ PTLASHASSI WDAEETCDAF SFQKNPVTLQ EVPSSFTFSS LRGCKHVART 660 NSMGYSHMTE DLPGSESRTE DHIQGDLMDE CQSDPQIAET KDIDELADIY WPDSLGPLDL 720 DLPSTNKYHN EELILGDSLS SLNRLIASSL DAFQNCSFFG FDKKEPSAFN S* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681841 | 0.0 | LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011. | |||
GenBank | LN713258 | 0.0 | LN713258.1 Cucumis melo genomic chromosome, chr_4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008442695.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_008442696.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_008442697.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_016899753.1 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A1S4DUV7 | 0.0 | A0A1S4DUV7_CUCME; TSL-kinase interacting protein 1 isoform X1 | ||||
STRING | XP_008442695.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 0.0 | TSL-kinase interacting protein 1 |