PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009302P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 471aa    MW: 51724.8 Da    PI: 8.8616
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009302P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.55e-32205261360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+kv ei+Y+geH h+k
  MELO3C009302P1 205 DGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSL-DGKVAEIVYKGEHSHPK 261
                     9***************************************.***************85 PP
2WRKY893.9e-28401455458
                     SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   4 gynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     g +WrKYGqK+vkg+ +prsYYrCt  +C+++k ver++edp+ +++tYeg+Hnh
  MELO3C009302P1 401 GIRWRKYGQKVVKGNLYPRSYYRCTGLKCKARKYVERASEDPDSFITTYEGKHNH 455
                     679**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.996198262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-29198262IPR003657WRKY domain
SuperFamilySSF1182901.44E-25200262IPR003657WRKY domain
SMARTSM007747.8E-36203261IPR003657WRKY domain
PfamPF031067.4E-25205260IPR003657WRKY domain
PROSITE profilePS5081129.023393458IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-27395456IPR003657WRKY domain
SuperFamilySSF1182901.57E-24396456IPR003657WRKY domain
SMARTSM007744.3E-29398457IPR003657WRKY domain
PfamPF031069.8E-23401455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDNKAAERVV IARPVASRPT CSSFKSFSDI LTCAFDTSPP NTSSETKIAA IRPKTVRFKV  60
KDNPGPSSGG KISETVPRTN SHGSSDTLAV SDSKTTVIFK PLAKHGNTNL QNCLPLPPVE  120
VCIQCPNQDD VNFQSALTSN LCIQCPNQDS DNFQSALTSN LPQDITSTVE NSQSIRSSRV  180
ALSYSKKDPT SSLRPQISGA QPSYDGYNWR KYGQKQVKGS EYPRSYYKCT HPSCPVKKKV  240
ERSLDGKVAE IVYKGEHSHP KPQPLKQNSS GTQREGSISN GTTRDTNPEL WLNYLNGRIE  300
GCESRIENHI EKACQGRGVI PFDPFSNREV NAGCGISDNS CGLSVECEEG RKGLESMDDK  360
LRNKKRGGKN PTNEGETSIE GVNEHHAMNR GSTGIEISGK GIRWRKYGQK VVKGNLYPRS  420
YYRCTGLKCK ARKYVERASE DPDSFITTYE GKHNHGISLE TSISVAPEME *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-22205457477Probable WRKY transcription factor 4
2lex_A3e-22205457477Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840230.0GU984023.1 Cucumis sativus WRKY protein (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442623.10.0PREDICTED: WRKY transcription factor 44 isoform X1
RefseqXP_016899726.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A1S4DUR80.0A0A1S4DUR8_CUCME; WRKY transcription factor 44 isoform X1
STRINGXP_008442623.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-90WRKY family protein