PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009127P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 286aa    MW: 31315.3 Da    PI: 4.8181
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009127P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.31.6e-33170226259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  MELO3C009127P3 170 NDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGTHNHA 226
                     7****************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-29156228IPR003657WRKY domain
PROSITE profilePS5081123.043164228IPR003657WRKY domain
SuperFamilySSF1182903.27E-25165228IPR003657WRKY domain
SMARTSM007745.8E-35169227IPR003657WRKY domain
PfamPF031061.7E-25170225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNSINQTINT LAGGSSDNRT NNFAMEVPKF KSLQPPPFPM SPSSYLSSFS SGLSPTEILN  60
SPLLFSFGVF PSPTTGALNL RNDCEEVDQQ EMKGDVKNYS VSAYNPQTGS SLSSYFQSSS  120
SNVTLLNPSG LSCDESGAKS EFVNTEMAAA ESKQNSQLAI YNREQQKSEN DGYNWRKYGQ  180
KQVKGSENPR SYYKCTFPSC PTKKKVERSL DGQITEIVYK GTHNHAKPQP TRRSGNSGVY  240
DPSAAESGVL QEDCSVSVGE EEIEPNSPFS NSIEENEKEP EAKRW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-171702281574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840220.0GU984022.1 Cucumis sativus WRKY protein (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442359.11e-179PREDICTED: probable WRKY transcription factor 26
TrEMBLA0A1S3B6611e-177A0A1S3B661_CUCME; probable WRKY transcription factor 26
STRINGXP_008442358.11e-176(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-42WRKY DNA-binding protein 33