PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009127P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 373aa    MW: 41412.9 Da    PI: 5.5716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009127P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33170226259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  MELO3C009127P2 170 NDGYNWRKYGQKQVKGSENPRSYYKCTFPSCPTKKKVERSL-DGQITEIVYKGTHNHA 226
                     7****************************************.***************7 PP
2WRKY35.22.5e-11319339222
                     --SS-EEEEEEE--TT-SS-E CS
            WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                      Dgy+WrKYGqK+vkg+++pr
  MELO3C009127P2 319 PDGYRWRKYGQKVVKGNPNPR 339
                     6*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-29156228IPR003657WRKY domain
PROSITE profilePS5081123.043164228IPR003657WRKY domain
SuperFamilySSF1182905.1E-25165228IPR003657WRKY domain
SMARTSM007745.8E-35169227IPR003657WRKY domain
PfamPF031062.6E-25170225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-13303340IPR003657WRKY domain
SuperFamilySSF1182901.96E-9310340IPR003657WRKY domain
PROSITE profilePS5081115.571313372IPR003657WRKY domain
SMARTSM007749.6E-5318360IPR003657WRKY domain
PfamPF031062.4E-7320342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MNSINQTINT LAGGSSDNRT NNFAMEVPKF KSLQPPPFPM SPSSYLSSFS SGLSPTEILN  60
SPLLFSFGVF PSPTTGALNL RNDCEEVDQQ EMKGDVKNYS VSAYNPQTGS SLSSYFQSSS  120
SNVTLLNPSG LSCDESGAKS EFVNTEMAAA ESKQNSQLAI YNREQQKSEN DGYNWRKYGQ  180
KQVKGSENPR SYYKCTFPSC PTKKKVERSL DGQITEIVYK GTHNHAKPQP TRRSGNSGVY  240
DPSAAESGVL QEDCSVSVGE EEIEPNSPFS NSIEENEKEP EAKRWKGENE NEGYCGGGSR  300
TVKEPRIVVQ TTSEIDILPD GYRWRKYGQK VVKGNPNPRF AFLLPSTLQS FLFSKFLQNS  360
TFLPFFFFFF FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-171702281574WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840220.0GU984022.1 Cucumis sativus WRKY protein (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442359.10.0PREDICTED: probable WRKY transcription factor 26
SwissprotQ6B6R42e-77WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1S3B6610.0A0A1S3B661_CUCME; probable WRKY transcription factor 26
STRINGXP_008442358.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-71WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]